PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17679_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 154aa    MW: 17186.1 Da    PI: 10.783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17679_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-202777255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  cra_locus_17679_iso_3_len_681_ver_3 27 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 77
                                         8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-322685IPR001471AP2/ERF domain
CDDcd000186.06E-292685No hitNo description
PfamPF008474.0E-142777IPR001471AP2/ERF domain
SMARTSM003805.0E-382791IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-242787IPR016177DNA-binding domain
PROSITE profilePS5103224.542785IPR001471AP2/ERF domain
PRINTSPR003673.1E-112839IPR001471AP2/ERF domain
PRINTSPR003673.1E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
XAAPPPQNEI KITSPEVKVV AEPKGKHYRG VRRRPWGKFA AEIRDPAKNG ARVWLGTFET  60
AEDAALAYDR AAYRMRGSRA LLNFPLRINS GEPEPVRITS KRSNSNSNSS TSSPSNSPSL  120
KRKKAIKVAE PPVLVVEQDT EHRGYGEQRL FSEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-442492270ATERF1
3gcc_A3e-442492270ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00548DAPTransfer from AT5G47220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549934.18e-55PREDICTED: ethylene-responsive transcription factor 1A-like
RefseqXP_006368978.11e-54hypothetical protein POPTR_0001s15390g
SwissprotO803376e-50EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A068UQX42e-55A0A068UQX4_COFCA; Uncharacterized protein
STRINGGLYMA17G15480.12e-54(Glycine max)
STRINGPOPTR_0001s15390.13e-54(Populus trichocarpa)